Publications

 



  1. •Gene expression analysis of biopsy samples reveals critical limitations of transcriptome-based molecular classifications of hepatocellular carcinoma.
    Zuzanna Makowska, Tujana Boldanova, David Adametz, Luca Quagliata, Julia E. Vogt, Michael T. Dill, Mathias S. Matter, Volker Roth, Luigi Terracciano, Markus H. Heim.

         Journal of Pathology: Clinical Research, in press, 2016.


  1. •Probabilistic Clustering of Time-Evolving Distance Data.
    Julia E. Vogt, Marius Kloft, Stefan Stark, Sandhya Prabhakaran, Sudhir Raman, Volker Roth and Gunnar Rätsch.
    Machine Learning Journal, 2015, DOI 10.1007/s10994-015-5516-x.



  1. •Unsupervised Structure Detection in Biomedical Data.
    Julia E. Vogt.
    IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI:10.1109/TCBB.2015.2394408, 2015.


  1. •Pegylated IFN-alpha regulates hepatic gene expression through transient Jak/STAT activation. Michael T. Dill, Zuzanna Makowska, Gaia Trincucci, Andreas J. Gruber, Julia E. Vogt, Magdalena Filipowicz, Diego Calabrese, Ilona Krol, Daryl T. Lau, Luigi Terracciano, Erik van Nimwegen, Volker Roth and Markus H. Heim.

         J Clin Invest. doi:10.1172/JCI70408, 2014.


  1. •Malaria Haplotype Frequency Estimation.
    Leonore Wigger, Julia E. Vogt and Volker Roth.
    Statistics in Medicine: 04/2013; DOI: 10.1002/sim.5792


  1. •P139: Continuous exposure to PEG-IFN-Alpha only transiently activates JAK-stat signalling in human liver. Makowska, Z and Dill, MT and Vogt, JE and Filipowicz, M and Terraciano, L and Roth, V and Heim, MH.

         Cytokine 59(3):563--564, 2012.


  1. •Automatic Model Selection in Archetype Analysis.
    Sandhya Prabhakaran, Sudhir Raman, Julia E. Vogt and Volker Roth.
    Pattern Recognition: Joint 34th DAGM and 36th OAGM Symposium, Lecture Notes in Computer Science, 2012


  1. •A Complete Analysis of the l_{1,p} Group-Lasso.
    Julia E. Vogt and Volker Roth.
    ICML 2012: Proceedings of the 29th international conference on Machine Learning.


  1. •Interferon-Induced Gene Expression is a Stronger Predictor of Treatment Response Than IL28B Genotype in Patients With Hepatitis C.
    Michael T. Dill, Francois H.T. Duong, Julia E. Vogt, Stephanie Bibert, Pierre-Yves Bochud, Luigi Terracciano, Andreas Papassotiropoulos, Volker Roth and Markus H. Heim.
    Gastroenterology, 2011 Mar;140(3):1021-1031.e10.
    Janssen Virology Award 2011 for HCV


  1. •The Group Lasso: l_{1,\infty} Regularization versus l_{1,2} Regularization.
    Julia E. Vogt, Volker Roth.
    Pattern Recognition: 32-nd DAGM Symposium, Lecture Notes in Computer Science, 2010.
    DAGM prize


  1. •The Translation-invariant Wishart-Dirichlet Process for Clustering Distance Data.
    Julia E. Vogt, Sandhya Prabhakaran, Thomas J. Fuchs, Volker Roth.
    ICML 2010: Proceedings of the 27th international conference on Machine Learning.
    Best paper runner up



         Diploma Thesis:

  1. •Primal-Dual Path-Following Methods for Linear Optimization.

         Forms the basis of chapter 6 of the book  Optimization - Theory and Practice
         by Wilhelm Forst and Dieter Hoffmann  (Springer-Verlag, SUMAT series).
         DMV prize